Grzegorz Ira: search on Z-Library

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1

Mechanisms of change in gene copy number

Hastings, P. J., Lupski, James R., Rosenberg, Susan M., Ira, Grzegorz

Journal:

Nature Reviews Genetics

Year:

2009

Language:

english

File:

PDF, 458 KB

english, 2009

2

Artifactual Hybridization Bands Associated with the Pulsed Field Gel Electrophoresis of Partially Digested Yeast Chromosomes

Grzegorz Ira, Ekaterina Svetlova, Jan Filipski

Journal:

Analytical Biochemistry

Year:

1998

Language:

english

File:

PDF, 436 KB

english, 1998

3

Saccharomyces cerevisiae Mre11/Rad50/Xrs2 and Ku proteins regulate association of Exo1 and Dna2 with DNA breaks

Shim, Eun Yong, Chung, Woo-Hyun, Nicolette, Matthew L, Zhang, Yu, Davis, Melody, Zhu, Zhu, Paull, Tanya T, Ira, Grzegorz, Lee, Sang Eun

Journal:

The EMBO Journal

Year:

2010

Language:

english

File:

PDF, 900 KB

english, 2010

4

DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1

Ira, Grzegorz, Pellicioli, Achille, Balijja, Alitukiriza, Wang, Xuan, Fiorani, Simona, Carotenuto, Walter, Liberi, Giordano, Bressan, Debra, Wan, Lihong, Hollingsworth, Nancy M.

Journal:

Year:

2004

Language:

english

File:

PDF, 550 KB

english, 2004

5

Distribution and Dynamics of Chromatin Modification Induced by a Defined DNA Double-Strand Break

Robert Shroff, Ayelet Arbel-Eden, Duane Pilch, Grzegorz Ira, William M. Bonner, John H. Petrini, James E. Haber, Michael Lichten

Journal:

Current Biology

Year:

2004

Language:

english

File:

PDF, 340 KB

english, 2004

6

The Fun30 nucleosome remodeller promotes resection of DNA double-strand break ends

Chen, Xuefeng, Cui, Dandan, Papusha, Alma, Zhang, Xiaotian, Chu, Chia-Dwo, Tang, Jiangwu, Chen, Kaifu, Pan, Xuewen, Ira, Grzegorz

Journal:

Year:

2012

Language:

english

File:

PDF, 970 KB

english, 2012

7

Sgs1 Helicase and Two Nucleases Dna2 and Exo1 Resect DNA Double-Strand Break Ends

Zhu Zhu, Woo-Hyun Chung, Eun Yong Shim, Sang Eun Lee, Grzegorz Ira

Journal:

Year:

2008

Language:

english

File:

PDF, 1.90 MB

english, 2008

8

Srs2 and Sgs1–Top3 Suppress Crossovers during Double-Strand Break Repair in Yeast

Grzegorz Ira, Anna Malkova, Giordano Liberi, Marco Foiani, James E. Haber

Journal:

Year:

2003

Language:

english

File:

PDF, 391 KB

english, 2003

9

Recovery from Checkpoint-Mediated Arrest after Repair of a Double-Strand Break Requires Srs2 Helicase

Moreshwar B Vaze, Achille Pellicioli, Sang Eun Lee, Grzegorz Ira, Giordano Liberi, Ayelet Arbel-Eden, Marco Foiani, James E Haber

Journal:

Year:

2002

Language:

english

File:

PDF, 601 KB

english, 2002

10

Break-induced replication: functions and molecular mechanism

Malkova, Anna, Ira, Grzegorz

Journal:

Current Opinion in Genetics & Development

Year:

2013

Language:

english

File:

PDF, 1.94 MB

english, 2013

11

Migrating bubble during break-induced replication drives conservative DNA synthesis

Saini, Natalie, Ramakrishnan, Sreejith, Elango, Rajula, Ayyar, Sandeep, Zhang, Yu, Deem, Angela, Ira, Grzegorz, Haber, James E., Lobachev, Kirill S., Malkova, Anna

Journal:

Year:

2013

Language:

english

File:

PDF, 3.08 MB

english, 2013

12

DNA breakage drives nuclear search

Ira, Grzegorz, Hastings, Philip J.

Journal:

Nature Cell Biology

Year:

2012

Language:

english

File:

PDF, 159 KB

english, 2012

13

Pif1 helicase and Polδ promote recombination-coupled DNA synthesis via bubble migration

Wilson, Marenda A., Kwon, YoungHo, Xu, Yuanyuan, Chung, Woo-Hyun, Chi, Peter, Niu, Hengyao, Mayle, Ryan, Chen, Xuefeng, Malkova, Anna, Sung, Patrick, Ira, Grzegorz

Journal:

Year:

2013

Language:

english

File:

PDF, 6.72 MB

english, 2013

14

Cell cycle regulation of DNA double-strand break end resection by Cdk1-dependent Dna2 phosphorylation

Chen, Xuefeng, Niu, Hengyao, Chung, Woo-Hyun, Zhu, Zhu, Papusha, Alma, Shim, Eun Yong, Lee, Sang Eun, Sung, Patrick, Ira, Grzegorz

Journal:

Nature Structural and Molecular Biology

Year:

2011

Language:

english

File:

PDF, 816 KB

english, 2011

15

Selective modulation of the functions of a conserved DNA motor by a histone fold complex

Xue, Xiaoyu, Choi, Koyi, Bonner, Jaclyn N., Szakal, Barnabas, Chen, Yu-Hung, Papusha, Alma, Saro, Dorina, Niu, Hengyao, Ira, Grzegorz, Branzei, Dana, Sung, Patrick, Zhao, Xiaolan

Journal:

Genes & Development

Year:

2015

Language:

english

File:

PDF, 703 KB

english, 2015

16

A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation

Hastings, P. J., Ira, Grzegorz, Lupski, James R., Matic, Ivan

Journal:

Year:

2009

Language:

english

File:

PDF, 302 KB

english, 2009

17

Defective Resection at DNA Double-Strand Breaks Leads to De Novo Telomere Formation and Enhances Gene Targeting

Chung, Woo-Hyun, Zhu, Zhu, Papusha, Alma, Malkova, Anna, Ira, Grzegorz, Lichten, Michael

Journal:

Year:

2010

Language:

english

File:

PDF, 1.24 MB

english, 2010

18

Hyper-Acetylation of Histone H3K56 Limits Break-Induced Replication by Inhibiting Extensive Repair Synthesis

Che, Jun, Smith, Stephanie, Kim, Yoo Jung, Shim, Eun Yong, Myung, Kyungjae, Lee, Sang Eun, Ira, Grzegorz

Journal:

Year:

2015

Language:

english

File:

PDF, 2.78 MB

english, 2015

19

Translesion Polymerases Drive Microhomology-Mediated Break-Induced Replication Leading to Complex Chromosomal Rearrangements

Sakofsky, Cynthia J., Ayyar, Sandeep, Deem, Angela K., Chung, Woo-Hyun, Ira, Grzegorz, Malkova, Anna

Journal:

Year:

2015

Language:

english

File:

PDF, 1.45 MB

english, 2015

20

Enrichment of Cdk1-cyclins at DNA double-strand breaks stimulates Fun30 phosphorylation and DNA end resection

Chen, Xuefeng, Niu, Hengyao, Yu, Yang, Wang, Jingjing, Zhu, Shuangyi, Zhou, Jianjie, Papusha, Alma, Cui, Dandan, Pan, Xuewen, Kwon, Youngho, Sung, Patrick, Ira, Grzegorz

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.27 MB

english, 2016

21

A novel role of the Dna2 translocase function in DNA break resection

Miller, Adam S., Daley, James M., Pham, Nhung Tuyet, Niu, Hengyao, Xue, Xiaoyu, Ira, Grzegorz, Sung, Patrick

Journal:

Genes & Development

Year:

2017

Language:

english

File:

PDF, 825 KB

english, 2017

22

Yeast Sub1 and human PC4 are G-quadruplex binding proteins that suppress genome instability at co-transcriptionally formed G4 DNA

Lopez, Christopher R., Singh, Shivani, Hambarde, Shashank, Griffin, Wezley C., Gao, Jun, Chib, Shubeena, Yu, Yang, Ira, Grzegorz, Raney, Kevin D., Kim, Nayun

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.67 MB

english, 2017

23

MRE11 and EXO1 nucleases degrade reversed forks and elicit MUS81-dependent fork rescue in BRCA2-deficient cells

Lemaçon, Delphine, Jackson, Jessica, Quinet, Annabel, Brickner, Joshua R., Li, Shan, Yazinski, Stephanie, You, Zhongsheng, Ira, Grzegorz, Zou, Lee, Mosammaparast, Nima, Vindigni, Alessandro

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.57 MB

english, 2017

24

Role of the Pif1-PCNA Complex in Pol δ-Dependent Strand Displacement DNA Synthesis and Break-Induced Replication

Buzovetsky, Olga, Kwon, Youngho, Pham, Nhung Tuyet, Kim, Claire, Ira, Grzegorz, Sung, Patrick, Xiong, Yong

Journal:

Year:

2017

Language:

english

File:

PDF, 2.31 MB

english, 2017

25

Break-induced replication promotes formation of lethal joint molecules dissolved by Srs2

Elango, Rajula, Sheng, Ziwei, Jackson, Jessica, DeCata, Jenna, Ibrahim, Younis, Pham, Nhung T., Liang, Diana H., Sakofsky, Cynthia J., Vindigni, Alessandro, Lobachev, Kirill S., Ira, Grzegorz, Malkova

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 2.62 MB

english, 2017

26

Predicting human genes susceptible to genomic instability associated with Alu/Alu-mediated rearrangements

Song, Xiaofei, Beck, Christine R, Du, Renqian, Campbell, Ian M, Coban-Akdemir, Zeynep, Gu, Shen, Breman, Amy M, Stankiewicz, Pawel, Ira, Grzegorz, Shaw, Chad A, Lupski, James R

Journal:

Genome Research

Year:

2018

Language:

english

File:

PDF, 1.64 MB

english, 2018

27

Bre1-dependent H2B ubiquitination promotes homologous recombination by stimulating histone eviction at DNA breaks

Zheng, Sihao, Li, Dan, Lu, Zhen, Liu, Guangxue, Wang, Meng, Xing, Poyuan, Wang, Min, Dong, Yang, Wang, Xuejie, Li, Jingyao, Zhang, Simin, Peng, Haoyang, Ira, Grzegorz, Li, Guohong, Chen, Xuefeng

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 4.19 MB

english, 2018

28

Dna2 nuclease deficiency results in large and complex DNA insertions at chromosomal breaks

Yu, Yang, Pham, Nhung, Xia, Bo, Papusha, Alma, Wang, Guangyu, Yan, Zhenxin, Peng, Guang, Chen, Kaifu, Ira, Grzegorz

Journal:

Year:

2018

Language:

english

File:

PDF, 8.08 MB

english, 2018

29

Rad52 Restrains Resection at DNA Double-Strand Break Ends in Yeast

Yan, Zhenxin, Xue, Chaoyou, Kumar, Sandeep, Crickard, J. Brooks, Yu, Yang, Wang, Weibin, Pham, Nhung, Li, Yuxi, Niu, Hengyao, Sung, Patrick, Greene, Eric C., Ira, Grzegorz

Journal:

Year:

2019

Language:

english

File:

PDF, 3.78 MB

english, 2019

30

A Rad51-independent pathway promotes single-strand template repair in gene editing

Gallagher, Danielle N., Pham, Nhung, Tsai, Annie M., Janto, Abigail N., Choi, Jihyun, Ira, Grzegorz, Haber, James E., Copenhaver, Gregory P.

Journal:

Year:

2020

File:

PDF, 3.76 MB

2020